ermine All Modules 18.04

  • Abseil/20230125.3-GCCcore-12.3.0 Abseil is an open-source collection of C++ library code designed to augment the C++ standard library. The Abseil library code is collected from Google’s own C++ code base, has been extensively tested and used in production, and is the same code we depend on in our daily coding lives.
  • AlphaFold/2.2.2-foss-2021a-CUDA-11.3.1 AlphaFold can predict protein structures with atomic accuracy even where no similar structure is known

  • Anaconda3/2022.05 Built to complement the rich, open source Python community, the Anaconda platform provides an enterprise-ready data analytics platform that empowers companies to adopt a modern open data science analytics architecture.

  • Apptainer/1.3.1-1 Apptainer is a portable application stack packaging and runtime utility.

  • Autoconf/2.71-GCCcore-11.2.0 Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.

  • Automake/1.16.5-GCCcore-12.3.0 Automake: GNU Standards-compliant Makefile generator

  • Autotools/20220317-GCCcore-12.3.0 This bundle collect the standard GNU build tools: Autoconf, Automake and libtool

  • BLIS/0.9.0-GCC-12.3.0 BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries.
  • Bazel/3.7.2-GCCcore-10.3.0 Bazel is a build tool that builds code quickly and reliably. It is used to build the majority of Google’s software.
  • Beast/1.10.5pre_thorney_v0.1.2-GCC-11.2.0 BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted proportional to its posterior probability.
  • Biopython/1.79-foss-2021a Biopython is a set of freely available tools for biological computation written in Python by an international team of developers. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics.

  • Bison/3.8.2 Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.

  • Brotli/1.0.9-GCCcore-11.2.0 Brotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression. The specification of the Brotli Compressed Data Format is defined in RFC 7932.

  • CMake/3.26.3-GCCcore-12.3.0 CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.

  • CUDA/12.1.1 CUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.
  • CUTLASS/3.4.0-foss-2023a-CUDA-12.1.1 easyconfig CUTLASS is a collection of CUDA C++ template abstractions for implementing high-performance matrix-matrix multiplication (GEMM) and related computations at all levels and scales within CUDA. It incorporates strategies for hierarchical decomposition and data movement similar to those used to implement cuBLAS and cuDNN. CUTLASS decomposes these “moving parts” into reusable, modular software components abstracted by C++ template classes. Primitives for different levels of a conceptual parallelization hierarchy can be specialized and tuned via custom tiling sizes, data types, and other algorithmic policy. The resulting flexibility simplifies their use as building blocks within custom kernels and applications.
  • DB/18.1.40-GCCcore-11.2.0 Berkeley DB enables the development of custom data management solutions, without the overhead traditionally associated with such custom projects.

  • Doxygen/1.9.1-GCCcore-10.3.0 Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.

  • Eigen/3.3.9-GCCcore-11.2.0 Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.
  • FFTW/3.3.10-gompi-2021b FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
  • FFTW.MPI/3.3.10-gompi-2023a FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
  • FLAC/1.3.3-GCCcore-11.2.0 FLAC stands for Free Lossless Audio Codec, an audio format similar to MP3, but lossless, meaning that audio is compressed in FLAC without any loss in quality.
  • FlexiBLAS/3.3.1-GCC-12.3.0 FlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK implementation used by a program without recompiling or relinking it.
  • GCC/12.3.0 The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,…).
  • GCCcore/12.3.0 The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,…).
  • GDAL/3.3.2-foss-2021b GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.
  • GDRCopy/2.3-GCCcore-11.2.0 A low-latency GPU memory copy library based on NVIDIA GPUDirect RDMA technology.
  • GEOS/3.9.1-GCC-11.2.0 GEOS (Geometry Engine
  • GLPK/5.0-GCCcore-11.2.0 The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library.
  • GLib/2.69.1-GCCcore-11.2.0 GLib is one of the base libraries of the GTK+ project

  • GMP/6.2.1-GCCcore-10.3.0 GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers.

  • GSL/2.7-GCC-11.2.0 The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.
  • Ghostscript/9.54.0-GCCcore-11.2.0 Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that.
  • Go/1.14 easyconfig Go is an open source programming language that makes it easy to build simple, reliable, and efficient software.

  • HDF/4.2.15-GCCcore-11.2.0 HDF (also known as HDF4) is a library and multi-object file format for storing and managing data between machines.

  • HDF5/1.12.1-gompi-2021b HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data.
  • HH-suite/3.3.0-gompi-2021a The HH-suite is an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs).
  • HMMER/3.3.2-gompi-2021a HMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other sequence alignment and database search tools based on older scoring methodology, HMMER aims to be significantly more accurate and more able to detect remote homologs because of the strength of its underlying mathematical models. In the past, this strength came at significant computational expense, but in the new HMMER3 project, HMMER is now essentially as fast as BLAST.
  • ICU/69.1-GCCcore-10.3.0 ICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications.
  • ImageMagick/7.1.0-4-GCCcore-11.2.0 ImageMagick is a software suite to create, edit, compose, or convert bitmap images

  • JasPer/2.0.33-GCCcore-11.2.0 The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.

  • Java/11.0.2 easyconfig Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
  • JsonCpp/1.9.4-GCCcore-11.2.0 JsonCpp is a C++ library that allows manipulating JSON values, including serialization and deserialization to and from strings. It can also preserve existing comment in unserialization/serialization steps, making it a convenient format to store user input files.
  • Kalign/3.3.2-GCCcore-11.2.0 easyconfig Kalign is a fast multiple sequence alignment program for biological sequences.
  • LLVM/12.0.1-GCCcore-11.2.0 The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation (“LLVM IR”). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator.
  • LMDB/0.9.29-GCCcore-11.2.0 LMDB is a fast, memory-efficient database. With memory-mapped files, it has the read performance of a pure in-memory database while retaining the persistence of standard disk-based databases.
  • LibTIFF/4.3.0-GCCcore-11.2.0 tiff: Library and tools for reading and writing TIFF data files
  • LittleCMS/2.12-GCCcore-11.2.0 Little CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance.

  • M4/1.4.19 GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.

  • MPFR/4.1.0-GCCcore-11.2.0 The MPFR library is a C library for multiple-precision floating-point computations with correct rounding.

  • MUMmer/4.0.0beta2-GCCcore-11.2.0 MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. AMOS makes use of it.

  • Mako/1.1.4-GCCcore-11.2.0 A super-fast templating language that borrows the best ideas from the existing templating languages
  • Mesa/21.1.7-GCCcore-11.2.0 Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.
  • Meson/1.1.1-GCCcore-12.3.0 Meson is a cross-platform build system designed to be both as fast and as user friendly as possible.
  • MrBayes/3.2.7a-foss-2021b easyconfig MrBayes is a program for the Bayesian estimation of phylogeny.
  • NASM/2.15.05-GCCcore-10.3.0 NASM: General-purpose x86 assembler
  • NCCL/2.10.3-GCCcore-10.3.0-CUDA-11.3.1 The NVIDIA Collective Communications Library (NCCL) implements multi-GPU and multi-node collective communication primitives that are performance optimized for NVIDIA GPUs.
  • NLopt/2.7.0-GCCcore-11.2.0 NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms.
  • Nextflow/22.04.0 Nextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data
  • Ninja/1.11.1-GCCcore-12.3.0 Ninja is a small build system with a focus on speed.
  • OpenBLAS/0.3.23-GCC-12.3.0 OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
  • OpenMPI/4.1.5-GCC-12.3.0 The Open MPI Project is an open source MPI-3 implementation.
  • OpenSSL/1.1 The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library.

  • PCRE/8.45-GCCcore-11.2.0 The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.

  • PCRE2/10.37-GCCcore-11.2.0 The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.

  • PMIx/4.2.4-GCCcore-12.3.0 Process Management for Exascale Environments PMI Exascale (PMIx) represents an attempt to provide an extended version of the PMI standard specifically designed to support clusters up to and including exascale sizes. The overall objective of the project is not to branch the existing pseudo-standard definitions
  • PROJ/8.1.0-GCCcore-11.2.0 Program proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates
  • Perl/5.36.1-GCCcore-12.3.0 Larry Wall’s Practical Extraction and Report Language

Includes a small selection of extra CPAN packages for core functionality.

  • Pillow/8.3.2-GCCcore-11.2.0 easyconfig Pillow is the ‘friendly PIL fork’ by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors.
  • PyYAML/5.4.1-GCCcore-11.2.0 PyYAML is a YAML parser and emitter for the Python programming language.
  • Python/3.11.3-GCCcore-12.3.0 Python is a programming language that lets you work more quickly and integrate your systems more effectively.

  • Qhull/2020.2-GCCcore-11.2.0 Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull.

  • R/4.2.0-foss-2021b easyconfig R is a free software environment for statistical computing and graphics.
  • RE2/2023-08-01-GCCcore-12.3.0 RE2 is a fast, safe, thread-friendly alternative to backtracking regular expression engines like those used in PCRE, Perl, and Python. It is a C++ library.
  • Rust/1.70.0-GCCcore-12.3.0 Rust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety.
  • SQLite/3.42.0-GCCcore-12.3.0 SQLite: SQL Database Engine in a C Library
  • SWIG/4.0.2-GCCcore-10.3.0 SWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.
  • ScaLAPACK/2.2.0-gompi-2023a-fb The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.
  • SciPy-bundle/2021.10-foss-2021b Bundle of Python packages for scientific software
  • Singularity/3.5.3 Singularity is a portable application stack packaging and runtime utility.

  • Szip/2.1.1-GCCcore-11.2.0 Szip compression software, providing lossless compression of scientific data

  • Tcl/8.6.13-GCCcore-12.3.0 Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.

  • TensorFlow/2.7.1-foss-2021b-CUDA-11.4.1 easyconfig An open-source software library for Machine Intelligence
  • Tk/8.6.11-GCCcore-11.2.0 Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.
  • Tkinter/3.9.6-GCCcore-11.2.0 Tkinter module, built with the Python buildsystem

  • UCC/1.2.0-GCCcore-12.3.0 UCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes.

  • UCX/1.14.1-GCCcore-12.3.0 Unified Communication X An open-source production grade communication framework for data centric and high-performance applications

  • UCX-CUDA/1.11.2-GCCcore-11.2.0-CUDA-11.4.1 Unified Communication X An open-source production grade communication framework for data centric and high-performance applications

This module adds the UCX CUDA support.

  • UDUNITS/2.2.28-GCCcore-11.2.0 UDUNITS supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of units, and conversion of values between compatible scales of measurement.
  • UnZip/6.0-GCCcore-12.3.0 UnZip is an extraction utility for archives compressed in .zip format (also called “zipfiles”). Although highly compatible both with PKWARE’s PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP’s own Zip program, our primary objectives have been portability and non-MSDOS functionality.
  • X11/20210802-GCCcore-11.2.0 The X Window System (X11) is a windowing system for bitmap displays
  • XZ/5.4.2-GCCcore-12.3.0 xz: XZ utilities
  • Xvfb/1.20.13-GCCcore-11.2.0 Xvfb is an X server that can run on machines with no display hardware and no physical input devices. It emulates a dumb framebuffer using virtual memory.
  • Zip/3.0-GCCcore-10.3.0 Zip is a compression and file packaging/archive utility. Although highly compatible both with PKWARE’s PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP’s own UnZip, our primary objectives have been portability and other-than-MSDOS functionality
  • awscliv2/2.2.0-GCC-11.2.0 Universal Command Line Environment for AWS
  • beagle-lib/3.1.2-GCC-11.2.0 easyconfig beagle-lib is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages.
  • binutils/2.40 binutils: GNU binary utilities

  • bzip2/1.0.8-GCCcore-12.3.0 bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.

  • cURL/8.0.1-GCCcore-12.3.0 libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more.

  • cairo/1.16.0-GCCcore-11.2.0 Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB

  • cffi/1.15.1-GCCcore-12.3.0 C Foreign Function Interface for Python. Interact with almost any C code from Python, based on C-like declarations that you can often copy-paste from header files or documentation.

  • cppy/1.2.1-GCCcore-12.3.0 A small C++ header library which makes it easier to write Python extension modules. The primary feature is a PyObject smart pointer which automatically handles reference counting and provides convenience methods for performing common object operations.
  • cuDNN/8.9.2.26-CUDA-12.1.1 The NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library of primitives for deep neural networks.
  • dill/0.3.7-GCCcore-12.3.0 dill extends python’s pickle module for serializing and de-serializing python objects to the majority of the built-in python types. Serialization is the process of converting an object to a byte stream, and the inverse of which is converting a byte stream back to on python object hierarchy.
  • double-conversion/3.1.5-GCCcore-10.3.0 Efficient binary-decimal and decimal-binary conversion routines for IEEE doubles.
  • einops/0.7.0-GCCcore-12.3.0 Flexible and powerful tensor operations for readable and reliable code. Supports numpy, pytorch, tensorflow, jax, and others.
  • expat/2.5.0-GCCcore-12.3.0 Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags).
  • flatbuffers/2.0.0-GCCcore-11.2.0 FlatBuffers: Memory Efficient Serialization Library
  • flatbuffers-python/2.0-GCCcore-10.3.0 Python Flatbuffers runtime library.

  • flex/2.6.4 Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.

  • flit/3.9.0-GCCcore-12.3.0 A simple packaging tool for simple packages.

  • fontconfig/2.13.94-GCCcore-11.2.0 Fontconfig is a library designed to provide system-wide font configuration, customization and application access.

  • foss/2023a GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.

  • freetype/2.11.0-GCCcore-11.2.0 FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well.

  • gettext/0.21.1-GCCcore-12.3.0 GNU ‘gettext’ is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation
  • gfbf/2023a GNU Compiler Collection (GCC) based compiler toolchain, including FlexiBLAS (BLAS and LAPACK support) and (serial) FFTW.
  • gh/1.3.1 easyconfig gh is GitHub on the command line.
  • giflib/5.2.1-GCCcore-11.2.0 giflib is a library for reading and writing gif images. It is API and ABI compatible with libungif which was in wide use while the LZW compression algorithm was patented.
  • git/2.41.0-GCCcore-12.3.0-nodocs Git is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency.
  • gompi/2023a GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.

  • gperf/3.1-GCCcore-11.2.0 GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only.

  • groff/1.22.4-GCCcore-10.3.0 Groff (GNU troff) is a typesetting system that reads plain text mixed with formatting commands and produces formatted output.
  • gzip/1.10-GCCcore-11.2.0 gzip (GNU zip) is a popular data compression program as a replacement for compress
  • h5py/3.6.0-foss-2021b HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data.
  • hatchling/1.18.0-GCCcore-12.3.0 Extensible, standards compliant build backend used by Hatch, a modern, extensible Python project manager.
  • help2man/1.49.3-GCCcore-12.3.0 help2man produces simple manual pages from the ‘–help’ and ‘–version’ output of other commands.

  • hwloc/2.9.1-GCCcore-12.3.0 The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, …) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently.

  • hypothesis/6.14.6-GCCcore-11.2.0 Hypothesis is an advanced testing library for Python. It lets you write tests which are parametrized by a source of examples, and then generates simple and comprehensible examples that make your tests fail. This lets you find more bugs in your code with less work.
  • intltool/0.51.0-GCCcore-11.2.0 intltool is a set of tools to centralize translation of many different file formats using GNU gettext-compatible PO files.
  • jax/0.3.9-foss-2021a-CUDA-11.3.1 Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more
  • jbigkit/2.1-GCCcore-11.2.0 JBIG-KIT is a software implementation of the JBIG1 data compression standard (ITU-T T.82), which was designed for bi-level image data, such as scanned documents.
  • libGLU/9.0.2-GCCcore-11.2.0 The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.

  • libarchive/3.6.2-GCCcore-12.3.0 Multi-format archive and compression library

  • libdrm/2.4.107-GCCcore-11.2.0 Direct Rendering Manager runtime library.

  • libevent/2.1.12-GCCcore-10.3.0 The libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts.

  • libfabric/1.18.0-GCCcore-12.3.0 Libfabric is a core component of OFI. It is the library that defines and exports the user-space API of OFI, and is typically the only software that applications deal with directly. It works in conjunction with provider libraries, which are often integrated directly into libfabric.

  • libffi/3.4.4-GCCcore-12.3.0 The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time.
  • libgeotiff/1.7.0-GCCcore-11.2.0 Library for reading and writing coordinate system information from/to GeoTIFF files
  • libgit2/1.1.1-GCCcore-11.2.0 libgit2 is a portable, pure C implementation of the Git core methods provided as a re-entrant linkable library with a solid API, allowing you to write native speed custom Git applications in any language which supports C bindings.
  • libglvnd/1.3.3-GCCcore-11.2.0 libglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors.
  • libiconv/1.16-GCCcore-11.2.0 Libiconv converts from one character encoding to another through Unicode conversion

  • libjpeg-turbo/2.0.6-GCCcore-10.3.0 libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding.

  • libogg/1.3.5-GCCcore-11.2.0 Ogg is a multimedia container format, and the native file and stream format for the Xiph.org multimedia codecs.
  • libpciaccess/0.17-GCCcore-12.3.0 Generic PCI access library.
  • libpng/1.6.37-GCCcore-10.3.0 libpng is the official PNG reference library

  • libreadline/8.2-GCCcore-12.3.0 The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.

  • libsndfile/1.0.31-GCCcore-11.2.0 Libsndfile is a C library for reading and writing files containing sampled sound (such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface.
  • libtirpc/1.3.2-GCCcore-11.2.0 Libtirpc is a port of Suns Transport-Independent RPC library to Linux.

  • libtool/2.4.7-GCCcore-12.3.0 GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.

  • libunwind/1.5.0-GCCcore-11.2.0 The primary goal of libunwind is to define a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). The API supports both local (same-process) and remote (across-process) operation. As such, the API is useful in a number of applications
  • libvorbis/1.3.7-GCCcore-11.2.0 Ogg Vorbis is a fully open, non-proprietary, patent-and-royalty-free, general-purpose compressed audio format

  • libxml2/2.11.4-GCCcore-12.3.0 Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).

  • libyaml/0.2.5-GCCcore-11.2.0 LibYAML is a YAML parser and emitter written in C.
  • lz4/1.9.3-GCCcore-11.2.0 LZ4 is lossless compression algorithm, providing compression speed at 400 MB/s per core. It features an extremely fast decoder, with speed in multiple GB/s per core.
  • make/4.4.1-GCCcore-12.3.0 GNU version of make utility
  • makeinfo/6.7-GCCcore-10.3.0-minimal makeinfo is part of the Texinfo project, the official documentation format of the GNU project.

This is a minimal build with very basic functionality. Should only be used for build dependencies.

  • matplotlib/3.4.3-foss-2021b matplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python and ipython shell, web application servers, and six graphical user interface toolkits.

  • ncurses/6.4-GCCcore-12.3.0 The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.

  • netCDF/4.8.1-gompi-2021b NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
  • nettle/3.7.3-GCCcore-11.2.0 Nettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, …), in applications like LSH or GNUPG, or even in kernel space.
  • networkx/2.6.3-foss-2021b NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks.
  • nodejs/14.17.6-GCCcore-11.2.0 Node.js is a platform built on Chrome’s JavaScript runtime for easily building fast, scalable network applications. Node.js uses an event-driven, non-blocking I/O model that makes it lightweight and efficient, perfect for data-intensive real-time applications that run across distributed devices.
  • nsync/1.24.0-GCCcore-11.2.0 nsync is a C library that exports various synchronization primitives, such as mutexes

  • numactl/2.0.16-GCCcore-12.3.0 The numactl program allows you to run your application program on specific cpu’s and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.

  • parameterized/0.9.0-GCCcore-12.3.0 Parameterized testing with any Python test framework
  • patchelf/0.18.0-GCCcore-12.3.0 PatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables.

  • pixman/0.40.0-GCCcore-11.2.0 Pixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server.

  • pkg-config/0.29.2-GCCcore-10.3.0 pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c pkg-config --libs --cflags glib-2.0 for instance, rather than hard-coding values on where to find glib (or other libraries).

  • pkgconf/1.9.5-GCCcore-12.3.0 pkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org.
  • pkgconfig/1.5.5-GCCcore-11.2.0-python pkgconfig is a Python module to interface with the pkg-config command line tool
  • protobuf/3.17.3-GCCcore-11.2.0 Google Protocol Buffers
  • protobuf-python/3.17.3-GCCcore-10.3.0 Python Protocol Buffers runtime library.
  • pyaml/21.10.1-GCC-11.2.0 easyconfig PyYAML-based python module to produce pretty and readable YAML-serialized data. This module is for serialization only, see ruamel.yaml module for literate YAML parsing (keeping track of comments, spacing, line/column numbers of values, etc).
  • pybind11/2.7.1-GCCcore-11.2.0 pybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa, mainly to create Python bindings of existing C++ code.
  • pytest-xdist/2.5.0-GCCcore-11.2.0 xdist: pytest distributed testing plugin

The pytest-xdist plugin extends pytest with some unique test execution modes:

* test run parallelization: if you have multiple CPUs or hosts you
  can use those for a combined test run. This allows to speed up
  development or to use special resources of remote machines.

* --looponfail: run your tests repeatedly in a subprocess. After
    each run pytest waits until a file in your project changes and
    then re-runs the previously failing tests. This is repeated
    until all tests pass after which again a full run is
    performed.

* Multi-Platform coverage: you can specify different Python
  interpreters or different platforms and run tests in parallel on
  all of them.

Before running tests remotely, pytest efficiently “rsyncs” your program source code to the remote place. All test results are reported back and displayed to your local terminal. You may specify different Python versions and interpreters.

  • scikit-build/0.17.6-GCCcore-12.3.0 Scikit-Build, or skbuild, is an improved build system generator for CPython C/C++/Fortran/Cython extensions.
  • scikit-learn/1.0.1-foss-2021b Scikit-learn integrates machine learning algorithms in the tightly-knit scientific Python world, building upon numpy, scipy, and matplotlib. As a machine-learning module, it provides versatile tools for data mining and analysis in any field of science and engineering. It strives to be simple and efficient, accessible to everybody, and reusable in various contexts.
  • scikit-optimize/0.9.0-foss-2021b easyconfig Scikit-Optimize, or skopt, is a simple and efficient library to minimize (very) expensive and noisy black-box functions.
  • setuptools-rust/1.6.0-GCCcore-12.3.0 setuptools-rust is a plugin for setuptools to build Rust Python extensions implemented with PyO3 or rust-cpython.
  • snappy/1.1.9-GCCcore-11.2.0 Snappy is a compression/decompression library. It does not aim for maximum compression, or compatibility with any other compression library; instead, it aims for very high speeds and reasonable compression.
  • typing-extensions/3.10.0.2-GCCcore-11.2.0 Typing Extensions – Backported and Experimental Type Hints for Python
  • util-linux/2.37-GCCcore-11.2.0 Set of Linux utilities
  • virtualenv/20.23.1-GCCcore-12.3.0 A tool for creating isolated virtual python environments.
  • xorg-macros/1.20.0-GCCcore-12.3.0 X.org macros utilities.
  • zlib/1.2.13-GCCcore-12.3.0 zlib is designed to be a free, general-purpose, legally unencumbered – that is, not covered by any patents – lossless data-compression library for use on virtually any computer hardware and operating system.
  • zstd/1.5.0-GCCcore-11.2.0 Zstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression/speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set.