Python-3.6.1-foss-2016b-fh1

Package List

• APScheduler-3.3.1 In-process task scheduler with Cron-like capabilities
• Babel-2.4.0 Internationalization utilities
• CacheControl-0.12.2 httplib2 caching for requests
• ConfigArgParse-0.11.0 A drop-in replacement for argparse that allows options to also be set via config files and/or environment variables.
• Cython-0.25.2 The Cython compiler for writing C extensions for the Python language.
• Flask-0.12.1 A simple framework for building complex web applications.
• Flask-Bootstrap-3.3.7.1 An extension that includes Bootstrap in your project, without any boilerplate code.
• Flask-Cors-3.0.2 A Flask extension adding a decorator for CORS support
• Flask-Debug-0.4.3 Shows reflection/configuration to aid the development of Flask applications.
• Flask-Migrate-2.0.3 SQLAlchemy database migrations for Flask applications using Alembic
• Flask-SQLAlchemy-2.2 Adds SQLAlchemy support to your Flask application
• Flask-Script-2.0.5 Scripting support for Flask
• Flask-WTF-0.14.2 Simple integration of Flask and WTForms.
• GitPython-2.1.3 Python Git Library
• HTSeq-0.7.2 A framework to process and analyze data from high-throughput sequencing (HTS) assays
• HeapDict-1.0.0 a heap with decrease-key and increase-key operations
• Jinja2-2.9.6 A small but fast and easy to use stand-alone template engine written in pure python.
• Mako-1.0.6 A super-fast templating language that borrows the best ideas from the existing templating languages.
• Markdown-2.6.8 Python implementation of Markdown.
• MarkupSafe-1.0 Implements a XML/HTML/XHTML Markup safe string for Python
• Nuitka-0.5.25 Python compiler with full language support and CPython compatibility
• Pillow-4.1.0 Python Imaging Library (Fork)
• PrettyTable-0.7.2 A simple Python library for easily displaying tabular data in a visually appealing ASCII table format.
• PyClone 0.12.9
• PyDP 0.2.2
• PyGithub-1.34 Use the full Github API v3
• PyGreSQL-5.0.3 Python PostgreSQL Interfaces
• PyInstaller-3.2.1 PyInstaller bundles a Python application and all its dependencies into a single package.
• PyMySQL-0.7.11 Pure Python MySQL Driver
• PyQtX-0.1.2 Mimics the structure of PyQt5 but provides PyQt4 as a fallback solution.
• PySide-1.2.1 Python bindings for the Qt cross-platform application and UI framework
• PyVCF-0.6.8 Variant Call Format (VCF) parser for Python
• PyYAML-3.12 YAML parser and emitter for Python
• Pygments-2.2.0 Pygments is a syntax highlighting package written in Python.
• SQLAlchemy-1.1.9 Database Abstraction Library
• Sphinx-1.5.5 Python documentation generator
• Theano-0.9.0 Optimizing compiler for evaluating mathematical expressions on CPUs and GPUs.
• WTForms-2.1 A flexible forms validation and rendering library for Python web development.
• Werkzeug-0.12.1 The comprehensive WSGI web application library.
• XlsxWriter-0.9.6 A Python module for creating Excel XLSX files.
• abstract_rendering-0.5.1 Rendering as a binning process
• aenum-2.0.6 Advanced Enumerations (compatible with Python’s stdlib Enum), NamedTuples, and NamedConstants
• alabaster-0.7.10 A configurable sidebar-enabled Sphinx theme
• alnvu-0.1.0 Reformat and condense multiple sequence alignments to highlight variability
• anaconda-client-1.2.2 Anaconda Cloud command line client library
• ansible-2.2.2.0 Radically simple IT automation
• apiwrapper-0.1.8 Simple API Wrapper
• appdirs-1.4.3 A small Python module for determining appropriate platform-specific dirs, e.g. a “user data dir”.
• argcomplete-1.8.2 Bash tab completion for argparse
• argh-0.26.2 An unobtrusive argparse wrapper with natural syntax
• argparse-1.4.0 Python command-line parsing library
• astroid-1.4.9 A abstract syntax tree for Python with inference support.
• astropy-1.3.2 Community-developed python astronomy tools
• asyncio-3.4.3 reference implementation of PEP 3156
• autopep8-1.3.1 A tool that automatically formats Python code to conform to the PEP 8 style guide
• awscli-1.11.76 Universal Command Line Environment for AWS.
• backports.shutil-get-terminal-size-1.0.0 A backport of the get_terminal_size function from Python 3.3’s shutil.
• bcbio-gff-0.6.4 Read and write Generic Feature Format (GFF) with Biopython integration.
• beautifulsoup4-4.5.3 Screen-scraping library
• biom-format-2.1.5 Biological Observation Matrix (BIOM) format
• biopython-1.69 Freely available tools for computational molecular biology.
• bitarray-0.8.1 efficient arrays of booleans – C extension
• bitstring-3.1.5 Simple construction, analysis and modification of binary data.
• blaze-0.10.1 Blaze
• bleach-2.0.0 An easy safelist-based HTML-sanitizing tool.
• blessings-1.6 A thin, practical wrapper around terminal coloring, styling, and positioning
• blinker-1.4 Fast, simple object-to-object and broadcast signaling
• blist-1.3.6 a list-like type with better asymptotic performance and similar performance on small lists
• bokeh-0.12.5 Interactive plots and applications in the browser from Python
• boto3-1.4.4 The AWS SDK for Python
• botocore-1.5.39 Low-level, data-driven core of boto 3.
• bpython-0.16 Fancy Interface to the Python Interpreter
• burrito-0.9.1 Framework for wrapping and controlling command-line applications.
• burrito-fillings-0.1.1 burrito-fillings: burrito application controllers for bioinformatics
• bz2file-0.98 Read and write bzip2-compressed files.
• certifi-2017.1.23 Python package for providing Mozilla’s CA Bundle.
• cffi-1.10.0 Foreign Function Interface for Python calling C code.
• chardet-3.0.1 Universal encoding detector for Python 2 and 3
• click-6.7 A simple wrapper around optparse for powerful command line utilities.
• cliff-2.5.0 Command Line Interface Formulation Framework
• cloudpickle-0.2.2 Extended pickling support for Python objects
• clyent-1.2.1 Command line client Library for windwos and posix
• cmd2-0.7.0 cmd2 - a tool for building interactive command line applications in Python
• colorama-0.3.7 Cross-platform colored terminal text.
• configobj-5.0.6 Config file reading, writing and validation.
• contextlib2-0.5.4 Backports and enhancements for the contextlib module
• cryptography-1.8.1 cryptography is a package which provides cryptographic recipes and primitives to Python developers.
• curtsies-0.2.11 Curses-like terminal wrapper, with colored strings!
• cutadapt-1.13 trim adapters from high-throughput sequencing reads
• cx_Freeze-5.0.1 create standalone executables from Python scripts
• cycler-0.10.0 Composable style cycles
• cytoolz-0.8.2 Cython implementation of Toolz: High performance functional utilities
• daemonize-2.4.7 Library to enable your code run as a daemon process on Unix-like systems.
• darkslide-2.3.3 Lightweight markup language-based html5 slideshow generator. Forked from Landslide.
• dask-0.14.1 Parallel PyData with Task Scheduling
• datacache-0.4.20 Helpers for transparently downloading datasets
• datashape-0.5.2 A data description language.
• dbf-0.96.8 Pure python package for reading/writing dBase, FoxPro, and Visual FoxPro .dbf files (including memos)
• deap-1.0.2 Distributed Evolutionary Algorithms in Python
• debtcollector-1.13.0 A collection of Python deprecation patterns and strategies that help you collect your technical debt in a non-destructive manner.
• decorator-4.0.11 Better living through Python with decorators
• deepTools-2.5.0.1 Useful tools for exploring deep sequencing data
• deprecation-1.0 A library to handle automated deprecations
• distributed-1.16.1 Distributed computing
• dnspython-1.15.0 A DNS toolkit for Python
• docutils-0.13.1 Docutils – Python Documentation Utilities
• dominate-2.3.1 Dominate is a Python library for creating and manipulating HTML documents using an elegant DOM API.
• drmaa-0.7.7 a python DRMAA library
• easygui-0.98.1 EasyGUI is a module for very simple, very easy GUI programming in Python. EasyGUI is different from other GUI generators in that EasyGUI is NOT event-driven. Instead, all GUI interactions are invoked by simple function calls.
• ecdsa-0.13 ECDSA cryptographic signature library (pure python)
• enum34-1.1.6 Python 3.4 Enum backported to 3.3, 3.2, 3.1, 2.7, 2.6, 2.5, and 2.4
• epydoc-3.0.1 Edward Loper’s API Documentation Generation Tool
• et_xmlfile-1.0.1 An implementation of lxml.xmlfile for the standard library
• fastcache-1.0.2 C implementation of Python 3 functools.lru_cache
• fasteners-0.14.1 A python package that provides useful locks.
• flask-appconfig-0.11.1 Configures Flask applications in a canonical way. Also auto-configures Heroku. Aims to standardize configuration.
• flask-nav-0.6 Easily create navigation for Flask applications.
• freezer-4.0.0 The OpenStack Backup Restore and Disaster Recovery as a Service Platform
• funcsigs-1.0.2 Python function signatures from PEP362 for Python 2.6, 2.7 and 3.2+
• future-0.16.0 Clean single-source support for Python 3 and 2
• gitdb2-2.0.0 Git Object Database
• google-1.9.3 Python bindings to the Google search engine.
• greenlet-0.4.12 Lightweight in-process concurrent programming
• gtfparse-0.0.6 GTF Parsing
• h5py-2.7.0 Read and write HDF5 files from Python
• html5lib-0.999999999 HTML parser based on the WHATWG HTML specification
• httplib2-0.10.3 A comprehensive HTTP client library.
• idna-2.5 Internationalized Domain Names in Applications (IDNA)
• imagesize-0.7.1 Getting image size from png/jpeg/jpeg2000/gif file
• inflection-0.3.1 A port of Ruby on Rails inflector to Python
• ip_associations_python_novaclient_ext-0.2 Adds Rackspace ip_associations support to python-novaclient
• ipaddress-1.0.18 IPv4/IPv6 manipulation library
• ipdb-0.10.2 IPython-enabled pdb
• iso8601-0.1.11 Simple module to parse ISO 8601 dates
• isort-4.2.5 A Python utility / library to sort Python imports.
• itsdangerous-0.24 Various helpers to pass trusted data to untrusted environments and back.
• jdcal-1.3 Julian dates from proleptic Gregorian and Julian calendars.
• jedi-0.10.2 An autocompletion tool for Python that can be used for text editors.
• jellyfish-0.5.6 a library for doing approximate and phonetic matching of strings.
• jmespath-0.9.2 JSON Matching Expressions
• json2html-1.1.1 JSON to HTML Table Representation
• jsonpatch-1.15 Apply JSON-Patches (RFC 6902)
• jsonpointer-1.10 Identify specific nodes in a JSON document (RFC 6901)
• jsonschema-2.6.0 An implementation of JSON Schema validation for Python
• jupyter_client-5.0.1 Jupyter protocol implementation and client libraries
• jupyter_console-5.1.0 Jupyter terminal console
• jupyter_core-4.3.0 Jupyter core package. A base package on which Jupyter projects rely.
• keyring-10.3.2 Store and access your passwords safely.
• keystoneauth1-2.19.0 Authentication Library for OpenStack Identity
• kivy-1.9.1 A software library for rapid development of hardware-accelerated multitouch applications.
• kivy-garden-0.1.4 Garden tool for kivy flowers.
• lazr.uri-1.0.3 A self-contained, easily reusable library for parsing, manipulating,
• lazy-object-proxy-1.2.2 A fast and thorough lazy object proxy.
• ldap3-2.2.2 A strictly RFC 4510 conforming LDAP V3 pure Python client library
• liac-arff-2.1.0 A module for read and write ARFF files in Python.
• locket-0.2.0 File-based locks for Python for Linux and Windows
• lockfile-0.12.2 Platform-independent file locking module
• logilab-common-1.4.0 collection of low-level Python packages and modules used by Logilab projects
• lxml-3.7.3 Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API.
• matplotlib-2.0.0 Python plotting package
• mccabe-0.6.1 McCabe checker, plugin for flake8
• memoized-property-1.0.3 A simple python decorator for defining properties that only run their fget function once
• messytables-0.15.2 Parse messy tabular data in various formats
• misopy-0.5.3 Mixture of Isoforms model (MISO) for isoform quantitation using RNA-Seq
• mistune-0.7.4 The fastest markdown parser in pure Python
• mock-2.0.0 Rolling backport of unittest.mock for all Pythons
• monotonic-1.3 An implementation of time.monotonic() for Python 2 & < 3.3
• moves-0.1 Moves Client API
• mpi4py-2.0.0 Python bindings for MPI
• mpmath-0.19 Python library for arbitrary-precision floating-point arithmetic
• msgpack-python-0.4.8 MessagePack (de)serializer.
• multipledispatch-0.4.9 Multiple dispatch
• natsort-5.0.2 Simple yet flexible natural sorting in Python.
• ndg-httpsclient-0.4.2 Provides enhanced HTTPS support for httplib and urllib2 using PyOpenSSL
• netCDF4-1.2.7 Provides an object-oriented python interface to the netCDF version 4 library.
• netaddr-0.7.19 A network address manipulation library for Python
• netifaces-0.10.5 Portable network interface information.
• networkx-1.11 Python package for creating and manipulating graphs and networks
• nltk-3.2.2 Natural Language Toolkit
• nose-1.3.7 nose extends unittest to make testing easier
• novaclient-auth-secretkey-0.1 Authentication plugin for novaclient enabling API key and secret key
• npyscreen-4.10.5 Writing user interfaces without all that ugly mucking about in hyperspace
• numexpr-2.6.2 Fast numerical expression evaluator for NumPy
• numpy-1.12.1 NumPy: array processing for numbers, strings, records, and objects.
• numpydoc-0.6.0 Sphinx extension to support docstrings in Numpy format
• oauth-1.0.1 Library for OAuth version 1.0a.
• odo-0.5.0 Data migration utilities
• olefile-0.44 Python package to parse, read and write Microsoft OLE2 files (Structured Storage or Compound Document, Microsoft Office) - Improved version of the OleFileIO module from PIL, the Python Image Library.
• openpyxl-2.4.5 A Python library to read/write Excel 2010 xlsx/xlsm files
• openstacksdk-0.9.14 An SDK for building applications to work with OpenStack
• os-client-config-1.26.0 OpenStack Client Configuation Library
• os_diskconfig_python_novaclient_ext-0.1.3 Disk Config extension for python-novaclient
• os_networksv2_python_novaclient_ext-0.26 Adds rackspace networks support to python-novaclient
• os_virtual_interfacesv2_python_novaclient_ext-0.20 Adds Virtual Interfaces support to python-novaclient
• osc-lib-1.3.0 OpenStackClient Library
• oslo.concurrency-3.20.0 Oslo Concurrency library
• oslo.config-3.24.0 Oslo Configuration API
• oslo.context-2.13.0 Oslo Context library
• oslo.i18n-3.15.0 Oslo i18n library
• oslo.log-3.24.0 oslo.log library
• oslo.serialization-2.18.0 Oslo Serialization library
• oslo.utils-3.25.0 Oslo Utility library
• packaging-16.8 Core utilities for Python packages
• pandas-0.19.2 Powerful data structures for data analysis, time series, and statistics
• pandocfilters-1.4.1 Utilities for writing pandoc filters in python
• paramiko-2.1.2 SSH2 protocol library
• parse-1.8.0 parse() is the opposite of format()
• path.py-10.1 A module wrapper for os.path
• pathlib2-2.2.1 Object-oriented filesystem paths
• pathtools-0.1.2 File system general utilities
• patsy-0.4.1 A Python package for describing statistical models and for building design matrices.
• paycheck-1.0.2 A Python QuickCheck implementation
• pbr-2.1.0 Python Build Reasonableness
• pep8-1.7.0 Python style guide checker
• pexpect-4.2.1 Pexpect allows easy control of interactive console applications.
• pickleshare-0.7.4 Tiny ‘shelve’-like database with concurrency support
• pip-9.0.1 The PyPA recommended tool for installing Python packages.
• ply-3.10 Python Lex & Yacc
• positional-1.1.1 Library to enforce positional or key-word arguments (deprecated/unmaintained)
• post-0.0.12 http POST dict
• progressbar33-2.4 Text progress bar library for Python.
• prompt_toolkit-1.0.14 Library for building powerful interactive command lines in Python
• protobuf-3.2.0 Protocol Buffers
• psutil-5.2.2 Cross-platform lib for process and system monitoring in Python.
• psycopg2-2.7.1 psycopg2 - Python-PostgreSQL Database Adapter
• ptyprocess-0.5.1 Run a subprocess in a pseudo terminal
• py-1.4.32 library with cross-python path, ini-parsing, io, code, log facilities
• py2bit-0.2.1 A package for accessing 2bit files using lib2bit
• pyBigWig-0.3.4 A package for accessing bigWig files using libBigWig
• pyOpenSSL-16.2.0 Python wrapper module around the OpenSSL library
• pyasn1-0.2.3 ASN.1 types and codecs
• pycosat-0.6.1 bindings to picosat (a SAT solver)
• pycparser-2.17 C parser in Python
• pycrypto-2.6.1 Cryptographic modules for Python.
• pycurl-7.43.0 PycURL – A Python Interface To The cURL library
• pyensembl-1.1.0 Python interface to ensembl reference genome metadata
• pyflakes-1.5.0 passive checker of Python programs
• pygithub3-0.5.1 Python wrapper for the github v3 api
• pyinotify-0.9.6 Linux filesystem events monitoring
• pylint-1.6.5 python code static checker
• pymongo-3.4.0 Python driver for MongoDB http://www.mongodb.org
• pymssql-2.1.3 DB-API interface to Microsoft SQL Server for Python. (new Cython-based version)
• pynast-1.2.2 The Python Nearest Alignment Space Termination tool
• pyodbc-4.0.16 DB API Module for ODBC
• pypandoc-1.3.3 Thin wrapper for pandoc.
• pyparsing-2.2.0 Python parsing module
• pysam-0.10.0 pysam
• pyserial-3.3 Python Serial Port Extension
• pytest-3.0.7 pytest: simple powerful testing with Python
• python-cinderclient-2.0.1 OpenStack Block Storage API Client Library
• python-dateutil-2.6.0 Extensions to the standard Python datetime module
• python-debian-0.1.28 Debian package related modules
• python-editor-1.0.3 Programmatically open an editor, capture the result.
• python-freezerclient-1.3.0 OpenStack Disaster Recovery API Client Library
• python-glanceclient-2.6.0 OpenStack Image API Client Library
• python-hostlist-1.17 Python module for hostlist handling
• python-keystoneclient-3.10.0 Client Library for OpenStack Identity
• python-novaclient-8.0.0 Client library for OpenStack Compute API
• python-openstackclient-3.9.0 OpenStack Command-line Client
• python-pam-1.8.2 Python PAM module using ctypes, py3/py2
• python-swiftclient-3.3.0 OpenStack Object Storage API Client Library
• pytz-2017.2 World timezone definitions, modern and historical
• pyxdg-0.25 PyXDG contains implementations of freedesktop.org standards in python.
• pyzmq-16.0.2 Python bindings for 0MQ
• qrcode-5.3 QR Code image generator
• rackspace-novaclient-2.1 Metapackage to install python-novaclient and Rackspace extensions
• redis-2.10.5 Python client for Redis key-value store
• reportlab-3.4.0 The Reportlab Toolkit
• requests-2.13.0 Python HTTP for Humans.
• requestsexceptions-1.2.0 Import exceptions from potentially bundled packages in requests.
• rfc3986-0.4.1 Validating URI References per RFC 3986
• rmtree-1.0 A sweet and simple python wrapper to shutil.rmtree
• roman-2.0.0 Integer to Roman numerals converter
• rsa-3.4.2 Pure-Python RSA implementation
• ruffus-2.6.3 Light-weight Python Computational Pipeline Management
• s3fs-0.0.9 Convenient Filesystem interface over S3
• s3transfer-0.1.10 An Amazon S3 Transfer Manager
• scandir-1.5 scandir, a better directory iterator and faster os.walk()
• scikit-bio-0.5.1 Data structures, algorithms and educational resources for bioinformatics.
• scikit-image-0.12.3 Image processing routines for SciPy
• scikit-learn-0.18.1 A set of python modules for machine learning and data mining
• scipy-0.19.0 SciPy: Scientific Library for Python
• serializable-0.1.1 Base class with serialization helpers for user-defined Python objects
• setuptools-34.4.1 Easily download, build, install, upgrade, and uninstall Python packages
• shove-0.6.6 Generic dictionaryish object storage frontend
• simplegeneric-0.8.1 Simple generic functions (similar to Python’s own len(), pickle.dump(), etc.)
• simplejson-3.10.0 Simple, fast, extensible JSON encoder/decoder for Python
• singledispatch-3.4.0.3 This library brings functools.singledispatch from Python 3.4 to Python 2.6-3.3.
• six-1.10.0 Python 2 and 3 compatibility utilities
• slurm-pipeline-1.1.1 A Python class for scheduling SLURM jobs
• smmap2-2.0.1 A pure python implementation of a sliding window memory map manager
• snowballstemmer-1.2.1 This package provides 16 stemmer algorithms (15 + Poerter English stemmer) generated from Snowball algorithms.
• sockjs-tornado-1.0.3 SockJS python server implementation on top of Tornado framework
• sortedcollections-0.5.3 Python Sorted Collections
• sortedcontainers-1.5.7 Sorted Containers – Sorted List, Sorted Dict, Sorted Set
• spyder-3.1.3 Scientific PYthon Development EnviRonment
• ssh-import-id-5.6 Authorize SSH public keys from trusted online identities
• statsmodels-0.8.0rc1 Statistical computations and models for Python
• stdeb-0.8.5 Python to Debian source package conversion utility
• stevedore-1.21.0 Manage dynamic plugins for Python applications
• stuf-0.9.16 Normal, default, ordered, chained, restricted, counter, and frozen dictionaries with attribute-style access.
• swiftly-2.06 Command line tool and client bindings for OpenStack Swift.
• sympy-1.0 Computer algebra system (CAS) in Python
• tblib-1.3.2 Traceback serialization library.
• terminado-0.6 Terminals served to xterm.js using Tornado websockets
• tinytimer-0.0.0 Tiny Python benchmarking library
• toil-3.7.0a1.dev386 Pipeline management software for clusters.
• toolz-0.8.2 List processing tools and functional utilities
• tornado-4.5b2 Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed.
• traitlets-4.3.2 Traitlets Python config system
• twobitreader-3.1.4 A fast python package for reading .2bit files (used by the UCSC genome browser)
• typechecks-0.0.2 Helper functions for runtime type checking
• tzlocal-1.3 tzinfo object for the local timezone
• ujson-1.35 Ultra fast JSON encoder and decoder for Python
• unicodecsv-0.14.1 Python2’s stdlib csv module is nice, but it doesn’t support unicode. This module is a drop-in replacement which does.
• uritemplate-3.0.0 URI templates
• urllib 1.21.1
• urwid-1.3.1 A full-featured console (xterm et al.) user interface library
• utils-0.9.0 Python Distribution Utilities
• vctools-0.1.6.1 A set of tools for interacting with the VMware vCloud API, whether on vCloud Air or locally installed.
• virtualenv-15.1.0 Virtual Python Environment builder
• visitor-0.1.3 A tiny pythonic visitor implementation.
• wadllib-1.3.2 Navigate HTTP resources using WADL files as guides.
• warlock-1.3.0 Python object model built on JSON schema and JSON patch.
• watchdog-0.8.3 Filesystem events monitoring
• wcwidth-0.1.7 Measures number of Terminal column cells of wide-character codes
• webencodings-0.5.1 Character encoding aliases for legacy web content
• wheel-0.30.0a0 A built-package format for Python.
• wrapt-1.10.10 Module for decorators, wrappers and monkey patching.
• xlrd-1.0.0 Library for developers to extract data from Microsoft Excel (tm) spreadsheet files
• xopen-0.1.1 Open compressed files transparently
• zict-0.1.1 Mutable mapping tools
• zmq-0.0.0 You are probably looking for pyzmq.
• zope.interface-4.3.3 Interfaces for Python