Python-3.6.3-foss-2016b-fh1

Package List

• APScheduler-3.3.1 In-process task scheduler with Cron-like capabilities
• AnyQt-0.0.8 PyQt4/PyQt5 compatibility layer.
• Babel-2.5.1 Internationalization utilities
• CacheControl-0.12.3 httplib2 caching for requests
• ConfigArgParse-0.12.0 A drop-in replacement for argparse that allows options to also be set via config files and/or environment variables.
• Cython-0.25.2 The Cython compiler for writing C extensions for the Python language.
• Flask-0.12.2 A simple framework for building complex web applications.
• Flask-Bootstrap-3.3.7.1 An extension that includes Bootstrap in your project, without any boilerplate code.
• Flask-Cors-3.0.3 A Flask extension adding a decorator for CORS support
• Flask-Debug-0.4.3 Shows reflection/configuration to aid the development of Flask applications.
• Flask-Migrate-2.1.1 SQLAlchemy database migrations for Flask applications using Alembic
• Flask-SQLAlchemy-2.3.2 Adds SQLAlchemy support to your Flask application
• Flask-Script-2.0.6 Scripting support for Flask
• Flask-WTF-0.14.2 Simple integration of Flask and WTForms.
• GitPython-2.1.7 Python Git Library
• HTSeq-0.9.1 A framework to process and analyze data from high-throughput sequencing (HTS) assays
• HeapDict-1.0.0 a heap with decrease-key and increase-key operations
• Jinja2-2.9.6 A small but fast and easy to use stand-alone template engine written in pure python.
• Keras-2.0.8 Deep Learning for humans
• Kivy-1.10.0 A software library for rapid development of hardware-accelerated multitouch applications.
• Mako-1.0.7 A super-fast templating language that borrows the best ideas from the existing templating languages.
• Markdown-2.6.9 Python implementation of Markdown.
• MarkupSafe-1.0 Implements a XML/HTML/XHTML Markup safe string for Python
• Nuitka-0.5.27 Python compiler with full language support and CPython compatibility
• Paste-2.0.3 Tools for using a Web Server Gateway Interface stack
• PasteDeploy-1.5.2 Load, configure, and compose WSGI applications and servers
• Pillow-4.3.0 Python Imaging Library (Fork)
• PrettyTable-0.7.2 A simple Python library for easily displaying tabular data in a visually appealing ASCII table format.
• PyClone 0.12.9
• PyDP 0.2.2
• PyGithub-1.35 Use the full Github API v3
• PyGreSQL-5.0.4 Python PostgreSQL Interfaces
• PyInstaller-3.3 PyInstaller bundles a Python application and all its dependencies into a single package.
• PyMySQL-0.7.11 Pure Python MySQL Driver
• PyNaCl-1.1.2 Python binding to the Networking and Cryptography (NaCl) library
• PyOpenGL-3.1.1a1 Standard OpenGL bindings for Python
• PyQt5-5.9 Python bindings for the Qt cross platform UI and application toolkit
• PyVCF-0.6.8 Variant Call Format (VCF) parser for Python
• PyWavelets-0.5.2 PyWavelets, wavelet transform module
• PyYAML-3.12 YAML parser and emitter for Python
• Pygments-2.2.0 Pygments is a syntax highlighting package written in Python.
• QtAwesome-0.4.4 FontAwesome icons in PyQt and PySide applications
• QtPy-1.3.1 Provides an abstraction layer on top of the various Qt bindings (PyQt5, PyQt4 and PySide) and additional custom QWidgets.
• Routes-2.4.1 Routing Recognition and Generation Tools
• SQLAlchemy-1.1.14 Database Abstraction Library
• Sphinx-1.6.4 Python documentation generator
• Theano-0.10.0beta3 Optimizing compiler for evaluating mathematical expressions on CPUs and GPUs.
• WTForms-2.1 A flexible forms validation and rendering library for Python web development.
• WebOb-1.7.3 WSGI request and response object
• Werkzeug-0.12.2 The comprehensive WSGI web application library.
• XlsxWriter-1.0.0 A Python module for creating Excel XLSX files.
• ZConfig-3.2.0 Structured Configuration Library
• abcpy-0.3 A framework for approximate Bayesian computation (ABC) that speeds up inference by parallelizing computation on single computers or whole clusters.
• abstract_rendering-0.5.1 Rendering as a binning process
• aenum-2.0.8 Advanced Enumerations (compatible with Python’s stdlib Enum), NamedTuples, and NamedConstants
• alabaster-0.7.10 A configurable sidebar-enabled Sphinx theme
• ansible-2.4.0.0 Radically simple IT automation
• apiwrapper-0.1.8 Simple API Wrapper
• appdirs-1.4.3 A small Python module for determining appropriate platform-specific dirs, e.g. a “user data dir”.
• argcomplete-1.9.2 Bash tab completion for argparse
• argh-0.26.2 An unobtrusive argparse wrapper with natural syntax
• argparse-1.4.0 Python command-line parsing library
• astroid-1.5.3 A abstract syntax tree for Python with inference support.
• asyncio-3.4.3 reference implementation of PEP 3156
• autopep8-1.3.3 A tool that automatically formats Python code to conform to the PEP 8 style guide
• awscli-1.11.170 Universal Command Line Environment for AWS.
• backports.weakref-1.0.post1 Backport of new features in Python’s weakref module
• bcbio-gff-0.6.4 Read and write Generic Feature Format (GFF) with Biopython integration.
• bcrypt-3.1.4 Modern password hashing for your software and your servers
• beautifulsoup4-4.6.0 Screen-scraping library
• biom-format-2.1.6 Biological Observation Matrix (BIOM) format
• biopython-1.70 Freely available tools for computational molecular biology.
• bitarray-0.8.1 efficient arrays of booleans – C extension
• bitstring-3.1.5 Simple construction, analysis and modification of binary data.
• blaze-0.10.1 Blaze
• bleach-2.1.1 An easy safelist-based HTML-sanitizing tool.
• blessings-1.6 A thin, practical wrapper around terminal coloring, styling, and positioning
• blinker-1.4 Fast, simple object-to-object and broadcast signaling
• blist-1.3.6 a list-like type with better asymptotic performance and similar performance on small lists
• bokeh-0.12.9 Interactive plots and applications in the browser from Python
• boto3-1.4.7 The AWS SDK for Python
• botocore-1.7.28 Low-level, data-driven core of boto 3.
• bpython-0.16 Fancy Interface to the Python Interpreter
• burrito-0.9.1 Framework for wrapping and controlling command-line applications.
• burrito-fillings-0.1.1 burrito-fillings: burrito application controllers for bioinformatics
• bz2file-0.98 Read and write bzip2-compressed files.
• celery-4.1.0 Distributed Task Queue.
• certifi-2017.7.27.1 Python package for providing Mozilla’s CA Bundle.
• cffi-1.11.2 Foreign Function Interface for Python calling C code.
• changeo-0.3.8 A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.
• chardet-3.0.4 Universal encoding detector for Python 2 and 3
• click-6.7 A simple wrapper around optparse for powerful command line utilities.
• cliff-2.9.1 Command Line Interface Formulation Framework
• cloudpickle-0.4.0 Extended pickling support for Python objects
• clyent-1.2.1 Command line client Library for windwos and posix
• cmd2-0.7.7 cmd2 - a tool for building interactive command line applications in Python
• colorama-0.3.9 Cross-platform colored terminal text.
• configobj-5.0.6 Config file reading, writing and validation.
• contextlib2-0.5.5 Backports and enhancements for the contextlib module
• coverage-4.4.1 Code coverage measurement for Python
• cryptography-2.1.1 cryptography is a package which provides cryptographic recipes and primitives to Python developers.
• curtsies-0.2.11 Curses-like terminal wrapper, with colored strings!
• cutadapt-1.14 trim adapters from high-throughput sequencing reads
• cx_Freeze-5.0.2 create standalone executables from Python scripts
• cycler-0.10.0 Composable style cycles
• cytoolz-0.8.2 Cython implementation of Toolz: High performance functional utilities
• daemonize-2.4.7 Library to enable your code run as a daemon process on Unix-like systems.
• darkslide-3.0.1 Lightweight markup language-based html5 slideshow generator. Forked from Landslide.
• dask-0.15.4 Parallel PyData with Task Scheduling
• dask-ml-0.4.0 A library for distributed and parallel machine learning
• dask-searchcv-0.2.0 Tools for doing hyperparameter search with Scikit-Learn and Dask
• dask-tensorflow-0.0.1 Interactions between Dask and Tensorflow
• datacache-0.4.20 Helpers for transparently downloading datasets
• datashape-0.5.2 A data description language.
• dbf-0.96.8 Pure python package for reading/writing dBase, FoxPro, and Visual FoxPro .dbf files (including memos)
• deap-1.0.2 Distributed Evolutionary Algorithms in Python
• debtcollector-1.17.1 A collection of Python deprecation patterns and strategies that help you collect your technical debt in a non-destructive manner.
• decorator-4.1.2 Better living through Python with decorators
• deepTools-2.5.3 Useful tools for exploring deep sequencing data
• deprecation-1.0.1 A library to handle automated deprecations
• distributed-1.19.2 Distributed computing
• dnspython-1.15.0 A DNS toolkit for Python
• docutils-0.14 Docutils – Python Documentation Utilities
• dominate-2.3.1 Dominate is a Python library for creating and manipulating HTML documents using an elegant DOM API.
• drmaa-0.7.8 a python DRMAA library
• easygui-0.98.1 EasyGUI is a module for very simple, very easy GUI programming in Python. EasyGUI is different from other GUI generators in that EasyGUI is NOT event-driven. Instead, all GUI interactions are invoked by simple function calls.
• easygui_qt-0.9.2 “Inspired by EasyGUI, designed for PyQt”
• ecdsa-0.13 ECDSA cryptographic signature library (pure python)
• entrypoints-0.2.3 Discover and load entry points from installed packages.
• enum34-1.1.6 Python 3.4 Enum backported to 3.3, 3.2, 3.1, 2.7, 2.6, 2.5, and 2.4
• epydoc-3.0.1 Edward Loper’s API Documentation Generation Tool
• et_xmlfile-1.0.1 An implementation of lxml.xmlfile for the standard library
• eventlet-0.21.0 Highly concurrent networking library
• fastcache-1.0.2 C implementation of Python 3 functools.lru_cache
• fasteners-0.14.1 A python package that provides useful locks.
• findspark-1.1.0 Find pyspark to make it importable.
• flask-appconfig-0.11.1 Configures Flask applications in a canonical way. Also auto-configures Heroku. Aims to standardize configuration.
• flask-nav-0.6 Easily create navigation for Flask applications.
• freezer-5.0.0 The OpenStack Backup Restore and Disaster Recovery as a Service Platform
• funcsigs-1.0.2 Python function signatures from PEP362 for Python 2.6, 2.7 and 3.2+
• future-0.16.0 Clean single-source support for Python 3 and 2
• gitdb2-2.0.3 Git Object Database
• google-1.9.3 Python bindings to the Google search engine.
• googleapis-common-protos-1.5.3 Common protobufs used in Google APIs
• greenlet-0.4.12 Lightweight in-process concurrent programming
• gtfparse-0.0.6 GTF Parsing
• h5py-2.7.1 Read and write HDF5 files from Python
• html5lib-0.999999999 HTML parser based on the WHATWG HTML specification
• httpie-0.9.9 HTTPie - a CLI, cURL-like tool for humans.
• httplib2-0.10.3 A comprehensive HTTP client library.
• idna-2.6 Internationalized Domain Names in Applications (IDNA)
• imagesize-0.7.1 Getting image size from png/jpeg/jpeg2000/gif file
• inflection-0.3.1 A port of Ruby on Rails inflector to Python
• ip_associations_python_novaclient_ext-0.2 Adds Rackspace ip_associations support to python-novaclient
• ipaddress-1.0.18 IPv4/IPv6 manipulation library
• ipdb-0.10.3 IPython-enabled pdb
• ipykernel-4.6.1 IPython Kernel for Jupyter
• ipython-6.2.1 IPython: Productive Interactive Computing
• ipython_genutils-0.2.0 Vestigial utilities from IPython
• iso8601-0.1.12 Simple module to parse ISO 8601 dates
• isort-4.2.15 A Python utility / library to sort Python imports.
• itsdangerous-0.24 Various helpers to pass trusted data to untrusted environments and back.
• jdcal-1.3 Julian dates from proleptic Gregorian and Julian calendars.
• jedi-0.11.0 An autocompletion tool for Python that can be used for text editors.
• jellyfish-0.5.6 a library for doing approximate and phonetic matching of strings.
• jmespath-0.9.3 JSON Matching Expressions
• json2html-1.2.1 JSON to HTML Table Representation
• jsonpatch-1.16 Apply JSON-Patches (RFC 6902)
• jsonpointer-1.12 Identify specific nodes in a JSON document (RFC 6901)
• jsonschema-2.6.0 An implementation of JSON Schema validation for Python
• jupyter-1.0.0 Jupyter metapackage. Install all the Jupyter components in one go.
• jupyter_client-5.1.0 Jupyter protocol implementation and client libraries
• jupyter_core-4.3.0 Jupyter core package. A base package on which Jupyter projects rely.
• keyring-10.4.0 Store and access your passwords safely.
• keystoneauth1-3.2.0 Authentication Library for OpenStack Identity
• kivy-garden-0.1.4 Garden tool for kivy flowers.
• lazr.uri-1.0.3 A self-contained, easily reusable library for parsing, manipulating,
• lazy-object-proxy-1.3.1 A fast and thorough lazy object proxy.
• ldap3-2.3 A strictly RFC 4510 conforming LDAP V3 pure Python client library
• liac-arff-2.1.1 A module for read and write ARFF files in Python.
• locket-0.2.0 File-based locks for Python for Linux and Windows
• lockfile-0.12.2 Platform-independent file locking module
• logilab-common-1.4.1 collection of low-level Python packages and modules used by Logilab projects
• lxml-4.1.0 Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API.
• matplotlib-2.1.0 Python plotting package
• mccabe-0.6.1 McCabe checker, plugin for flake8
• memoized-property-1.0.3 A simple python decorator for defining properties that only run their fget function once
• messytables-0.15.2 Parse messy tabular data in various formats
• mincemeat-0.1.4 UNKNOWN
• misopy-0.5.4 Mixture of Isoforms model (MISO) for isoform quantitation using RNA-Seq
• mistune-0.7.4 The fastest markdown parser in pure Python
• mock-2.0.0 Rolling backport of unittest.mock for all Pythons
• monotonic-1.3 An implementation of time.monotonic() for Python 2 & < 3.3
• mpi4py-2.0.0 Python bindings for MPI
• mpmath-1.0.0 Python library for arbitrary-precision floating-point arithmetic
• msgpack-python-0.4.8 MessagePack (de)serializer.
• multipledispatch-0.4.9 Multiple dispatch
• natsort-5.1.0 Simple yet flexible natural sorting in Python.
• nbconvert-5.3.1 Converting Jupyter Notebooks
• nbformat-4.4.0 The Jupyter Notebook format
• ndg-httpsclient-0.4.3 Provides enhanced HTTPS support for httplib and urllib2 using PyOpenSSL
• netCDF4-1.3.0 Provides an object-oriented python interface to the netCDF version 4 library.
• netaddr-0.7.19 A network address manipulation library for Python
• netifaces-0.10.6 Portable network interface information.
• networkx-2.0 Python package for creating and manipulating graphs and networks
• nltk-3.2.5 Natural Language Toolkit
• nose-1.3.7 nose extends unittest to make testing easier
• notebook-5.2.0 A web-based notebook environment for interactive computing
• novaclient-auth-secretkey-0.1 Authentication plugin for novaclient enabling API key and secret key
• npyscreen-4.10.5 Writing user interfaces without all that ugly mucking about in hyperspace
• numexpr-2.6.4 Fast numerical expression evaluator for NumPy
• numpy-1.13.3 NumPy: array processing for numbers, strings, records, and objects.
• numpydoc-0.7.0 Sphinx extension to support docstrings in Numpy format
• oauth-1.0.1 Library for OAuth version 1.0a.
• olefile-0.44 Python package to parse, read and write Microsoft OLE2 files (Structured Storage or Compound Document, Microsoft Office) - Improved version of the OleFileIO module from PIL, the Python Image Library.
• oncodrivefml-2.0.3
• ont-fast5-api-0.4.1 Oxford Nanopore Technologies fast5 API software
• opencv_python-3.3.0.10 Wrapper package for OpenCV python bindings.
• openpyxl-2.5.0a3 A Python library to read/write Excel 2010 xlsx/xlsm files
• openstacksdk-0.9.18 An SDK for building applications to work with OpenStack
• os-brick-1.15.3 OpenStack Cinder brick library for managing local volume attaches
• os-client-config-1.28.0 OpenStack Client Configuation Library
• os-win-2.2.0 Windows / Hyper-V library for OpenStack projects.
• os_diskconfig_python_novaclient_ext-0.1.3 Disk Config extension for python-novaclient
• os_networksv2_python_novaclient_ext-0.26 Adds rackspace networks support to python-novaclient
• os_virtual_interfacesv2_python_novaclient_ext-0.20 Adds Virtual Interfaces support to python-novaclient
• osc-lib-1.7.0 OpenStackClient Library
• oslo.concurrency-3.21.1 Oslo Concurrency library
• oslo.config-4.13.1 Oslo Configuration API
• oslo.context-2.19.1 Oslo Context library
• oslo.i18n-3.18.0 Oslo i18n library
• oslo.log-3.31.0 oslo.log library
• oslo.privsep-1.23.0 OpenStack library for privilege separation
• oslo.serialization-2.13.2 Oslo Serialization library
• oslo.service-1.26.0 oslo.service library
• oslo.utils-3.30.0 Oslo Utility library
• packaging-16.8 Core utilities for Python packages
• pandas-0.21.0rc1 Powerful data structures for data analysis, time series, and statistics
• pandocfilters-1.4.2 Utilities for writing pandoc filters in python
• paramiko-2.3.1 SSH2 protocol library
• parse-1.8.2 parse() is the opposite of format()
• parso-0.1.0 A Python Parser
• path.py-10.4 A module wrapper for os.path
• pathlib2-2.3.0 Object-oriented filesystem paths
• pathtools-0.1.2 File system general utilities
• patsy-0.4.1 A Python package for describing statistical models and for building design matrices.
• paycheck-1.0.2 A Python QuickCheck implementation
• pbr-3.1.1 Python Build Reasonableness
• pep8-1.7.0 Python style guide checker
• pexpect-4.2.1 Pexpect allows easy control of interactive console applications.
• pickleshare-0.7.4 Tiny ‘shelve’-like database with concurrency support
• pip-9.0.1 The PyPA recommended tool for installing Python packages.
• ply-3.10 Python Lex & Yacc
• porechop 0.2.0
• positional-1.2.1 Library to enforce positional or key-word arguments (deprecated/unmaintained)
• presto-0.5.4 A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.
• progressbar33-2.4 Text progress bar library for Python.
• prompt_toolkit-1.0.15 Library for building powerful interactive command lines in Python
• protobuf-3.4.0 Protocol Buffers
• psutil-5.4.0 Cross-platform lib for process and system monitoring in Python.
• psycopg2-2.7.3.1 psycopg2 - Python-PostgreSQL Database Adapter
• ptyprocess-0.5.2 Run a subprocess in a pseudo terminal
• py-1.4.34 library with cross-python path, ini-parsing, io, code, log facilities
• py2bit-0.2.1 A package for accessing 2bit files using lib2bit
• pyBigWig-0.3.5 A package for accessing bigWig files using libBigWig
• pyOpenSSL-17.3.0 Python wrapper module around the OpenSSL library
• pyasn1-0.3.7 ASN.1 types and codecs
• pycodestyle-2.3.1 Python style guide checker
• pycosat-0.6.1 bindings to picosat (a SAT solver)
• pycparser-2.18 C parser in Python
• pycrypto-2.6.1 Cryptographic modules for Python.
• pycurl-7.43.0 PycURL – A Python Interface To The cURL library
• pydicom-0.9.9 Pure python package for DICOM medical file reading and writing
• pyensembl-1.1.0 Python interface to ensembl reference genome metadata
• pyflakes-1.6.0 passive checker of Python programs
• pygithub3-0.5.1 Python wrapper for the github v3 api
• pyinotify-0.9.6 Linux filesystem events monitoring
• pymongo-3.5.1 Python driver for MongoDB http://www.mongodb.org
• pymssql-2.1.3 DB-API interface to Microsoft SQL Server for Python. (new Cython-based version)
• pynast-1.2.2 The Python Nearest Alignment Space Termination tool
• pyodbc-4.0.17 DB API Module for ODBC
• pypandoc-1.4 Thin wrapper for pandoc.
• pyparsing-2.2.0 Python parsing module
• pysam-0.12.0.1 pysam
• pyserial-3.4 Python Serial Port Extension
• pytest-3.2.3 pytest: simple powerful testing with Python
• python-cinderclient-3.2.0 OpenStack Block Storage API Client Library
• python-dateutil-2.6.1 Extensions to the standard Python datetime module
• python-editor-1.0.3 Programmatically open an editor, capture the result.
• python-freezerclient-1.5.0 OpenStack Disaster Recovery API Client Library
• python-glanceclient-2.8.0 OpenStack Image API Client Library
• python-hostlist-1.17 Python module for hostlist handling
• python-keystoneclient-3.13.0 Client Library for OpenStack Identity
• python-neutronclient-6.1.1 CLI and Client Library for OpenStack Networking
• python-openstackclient-3.12.0 OpenStack Command-line Client
• python-pam-1.8.2 Python PAM module using ctypes, py3/py2
• python-swiftclient-3.4.0 OpenStack Object Storage API Client Library
• pytz-2017.2 World timezone definitions, modern and historical
• pyxdg-0.25 PyXDG contains implementations of freedesktop.org standards in python.
• pyzmq-17.0.0b1 Python bindings for 0MQ
• qrcode-5.3 QR Code image generator
• qtconsole-4.3.1 Jupyter Qt console
• rackspace-auth-openstack-1.3 Rackspace Auth Plugin for OpenStack Clients.
• rackspace-novaclient-2.1 Metapackage to install python-novaclient and Rackspace extensions
• rax_default_network_flags_python_novaclient_ext-0.4.0 Novaclient Extension for Instance Default Network Flags
• rax_scheduled_images_python_novaclient_ext-0.3.1 Extends python-novaclient to use RAX-SI, the Rackspace Nova API Scheduled Images extension
• redis-2.10.6 Python client for Redis key-value store
• reportlab-3.4.0 The Reportlab Toolkit
• repoze.lru-0.7 A tiny LRU cache implementation and decorator
• requests-2.18.4 Python HTTP for Humans.
• requestsexceptions-1.3.0 Import exceptions from potentially bundled packages in requests.
• retrying-1.3.3 Retrying
• rfc3986-1.1.0 Validating URI References per RFC 3986
• roman-2.0.0 Integer to Roman numerals converter
• rope-0.10.7 a python refactoring library…
• rsa-3.4.2 Pure-Python RSA implementation
• ruffus-2.6.3 Light-weight Python Computational Pipeline Management
• s3fs-0.1.2 Convenient Filesystem interface over S3
• s3transfer-0.1.11 An Amazon S3 Transfer Manager
• scandir-1.6 scandir, a better directory iterator and faster os.walk()
• scikit-bio-0.5.1 Data structures, algorithms and educational resources for bioinformatics.
• scikit-image-0.13.1 Image processing routines for SciPy
• scikit-learn-0.19.0 A set of python modules for machine learning and data mining
• scipy-1.0.0rc1 SciPy: Scientific Library for Python
• seaborn-0.8.1 Seaborn: statistical data visualization
• serializable-0.1.1 Base class with serialization helpers for user-defined Python objects
• setuptools-36.6.0 Easily download, build, install, upgrade, and uninstall Python packages
• shove-0.6.6 Generic dictionaryish object storage frontend
• simplegeneric-0.8.1 Simple generic functions (similar to Python’s own len(), pickle.dump(), etc.)
• simplejson-3.11.1 Simple, fast, extensible JSON encoder/decoder for Python
• singledispatch-3.4.0.3 This library brings functools.singledispatch from Python 3.4 to Python 2.6-3.3.
• sip-4.19.3 Python extension module generator for C and C++ libraries
• six-1.11.0 Python 2 and 3 compatibility utilities
• sklearn-0.0 A set of python modules for machine learning and data mining
• slurm-pipeline-1.1.13 A Python class for scheduling SLURM jobs
• smmap2-2.0.3 A pure python implementation of a sliding window memory map manager
• snakemake-4.2.0 Snakemake is a workflow management system that aims to reduce the complexity of creating workflows by providing a fast and comfortable execution environment, together with a clean and modern specification language in python style. Snakemake workflows are essentially Python scripts extended by declarative code to define rules. Rules describe how to create output files from input files.
• snowballstemmer-1.2.1 This package provides 16 stemmer algorithms (15 + Poerter English stemmer) generated from Snowball algorithms.
• sockjs-tornado-1.0.3 SockJS python server implementation on top of Tornado framework
• sortedcollections-0.5.3 Python Sorted Collections
• sortedcontainers-1.5.7 Sorted Containers – Sorted List, Sorted Dict, Sorted Set
• sphinx_rtd_theme-0.2.5b1 Read the Docs theme for Sphinx
• spyder-3.2.3 Scientific PYthon Development EnviRonment
• ssh-import-id-5.6 Authorize SSH public keys from trusted online identities
• statsmodels-0.8.0 Statistical computations and models for Python
• stdeb-0.8.5 Python to Debian source package conversion utility
• stevedore-1.27.1 Manage dynamic plugins for Python applications
• stuf-0.9.16 Normal, default, ordered, chained, restricted, counter, and frozen dictionaries with attribute-style access.
• swiftly-2.06 Command line tool and client bindings for OpenStack Swift.
• sympy-1.1.1 Computer algebra system (CAS) in Python
• tblib-1.3.2 Traceback serialization library.
• tensorflow-1.3.0 TensorFlow helps the tensors flow
• tensorflow-tensorboard-0.4.0rc1 TensorBoard lets you watch Tensors Flow
• terminado-0.6 Terminals served to xterm.js using Tornado websockets
• testpath-0.3.1 Test utilities for code working with files and commands
• textblob-0.13.1 Simple, Pythonic text processing. Sentiment analysis, part-of-speech tagging, noun phrase parsing, and more.
• tinytimer-0.0.0 Tiny Python benchmarking library
• toil-3.11.0 Pipeline management software for clusters.
• toolz-0.8.2 List processing tools and functional utilities
• tornado-4.5.2 Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed.
• traitlets-4.3.2 Traitlets Python config system
• twobitreader-3.1.4 A fast python package for reading .2bit files (used by the UCSC genome browser)
• typechecks-0.0.2 Helper functions for runtime type checking
• tzlocal-1.4 tzinfo object for the local timezone
• ujson-1.35 Ultra fast JSON encoder and decoder for Python
• umi_tools-0.5.0 umi_tools: Tools for UMI analyses
• unicodecsv-0.14.1 Python2’s stdlib csv module is nice, but it doesn’t support unicode. This module is a drop-in replacement which does.
• uritemplate-3.0.0 URI templates
• uritemplate.py-3.0.2 URI templates
• urllib3-1.22 HTTP library with thread-safe connection pooling, file post, and more.
• urwid-1.3.1 A full-featured console (xterm et al.) user interface library
• utils-0.9.0 Python Distribution Utilities
• vctools-0.1.6.1 A set of tools for interacting with the VMware vCloud API, whether on vCloud Air or locally installed.
• virtualenv-15.1.0 Virtual Python Environment builder
• visitor-0.1.3 A tiny pythonic visitor implementation.
• wadllib-1.3.2 Navigate HTTP resources using WADL files as guides.
• warlock-1.3.0 Python object model built on JSON schema and JSON patch.
• watchdog-0.8.3 Filesystem events monitoring
• wcwidth-0.1.7 Measures number of Terminal column cells of wide-character codes
• webencodings-0.5.1 Character encoding aliases for legacy web content
• whatshap-0.14.1 phase genomic variants using DNA sequencing reads
• wheel-0.30.0 A built-package format for Python.
• wrapt-1.10.11 Module for decorators, wrappers and monkey patching.
• xlrd-1.1.0 Library for developers to extract data from Microsoft Excel (tm) spreadsheet files
• xlwt-1.3.0 Library to create spreadsheet files compatible with MS Excel 97/2000/XP/2003 XLS files, on any platform, with Python 2.6, 2.7, 3.3+
• xopen-0.2.1 Open compressed files transparently
• zict-0.1.3 Mutable mapping tools
• zope.interface-4.4.3 Interfaces for Python