R-3.4.3-GCC-5.4.0-2.26

Package List

  • BH-1.65.0-1 Boost C++ Header Files
  • Biobase 2.38.0
  • BiocGenerics 0.24.0
  • Biostrings 2.46.0
  • DBI-0.7 R Database Interface
  • DNAcopy 1.52.0
  • GENESIS 2.8.1
  • GWASExactHW-1.01 Exact Hardy-Weinburg testing for Genome Wide Association Studies
  • GWASTools 1.24.1
  • GenomeInfoDb 1.14.0
  • GenomeInfoDbData 1.0.0
  • GenomicRanges 1.30.1
  • IRanges 2.12.0
  • MASS-7.3-48 Support Functions and Datasets for Venables and Ripley’s MASS
  • Matrix-1.2-12 Sparse and Dense Matrix Classes and Methods
  • MatrixModels-0.4-1 Modelling with Sparse And Dense Matrices
  • R6-2.2.2 Classes with Reference Semantics
  • RCurl-1.95-4.10 General Network (HTTP/FTP/…) Client Interface for R
  • RSQLite-2.0 ‘SQLite’ Interface for R
  • Rcpp-0.12.15 Seamless R and C++ Integration
  • S4Vectors 0.16.0
  • SeqArray 1.18.2
  • SeqVarTools 1.16.0
  • SparseM-1.77 Sparse Linear Algebra
  • XVector 0.18.0
  • assertthat-0.2.0 Easy Pre and Post Assertions
  • base built in
  • bindr-0.1 Parametrized Active Bindings
  • bindrcpp-0.2 An ‘Rcpp’ Interface to Active Bindings
  • bit-1.1-12 A Class for Vectors of 1-Bit Booleans
  • bit64-0.9-7 A S3 Class for Vectors of 64bit Integers
  • bitops-1.0-6 Bitwise Operations
  • blob-1.1.0 A Simple S3 Class for Representing Vectors of Binary Data (‘BLOBS’)
  • cli-1.0.0 Helpers for Developing Command Line Interfaces
  • compiler built in
  • crayon-1.3.4 Colored Terminal Output
  • datasets built in
  • digest-0.6.15 Create Compact Hash Digests of R Objects
  • dplyr-0.7.4 A Grammar of Data Manipulation
  • gdsfmt-1.14.1 R Interface to CoreArray Genomic Data Structure (GDS) files
  • glue-1.2.0 Interpreted String Literals
  • grDevices built in
  • graph-1.56.0 graph: A package to handle graph data structures
  • graphics built in
  • grid built in
  • lattice-0.20-35 Trellis Graphics for R
  • lmtest-0.9-35 Testing Linear Regression Models
  • logistf-1.22 Firth’s Bias-Reduced Logistic Regression
  • magrittr-1.5 A Forward-Pipe Operator for R
  • memoise-1.1.0 Memoisation of Functions
  • methods built in
  • mgcv-1.8-23 Mixed GAM Computation Vehicle with Automatic Smoothness Estimation
  • mice-2.46.0 Multivariate Imputation by Chained Equations
  • nlme-3.1-131 Linear and Nonlinear Mixed Effects Models
  • nnet-7.3-12 Feed-Forward Neural Networks and Multinomial Log-Linear Models
  • pillar-1.1.0 Coloured Formatting for Columns
  • pkgconfig-2.0.1 Private Configuration for ‘R’ Packages
  • plogr-0.1-1 The ‘plog’ C++ Logging Library
  • purrr-0.2.4 Functional Programming Tools
  • quantreg-5.34 Quantile Regression
  • quantsmooth 1.44.0
  • rlang-0.1.6 Functions for Base Types and Core R and ‘Tidyverse’ Features
  • rpart-4.1-12 Recursive Partitioning and Regression Trees
  • sandwich-2.4-0 Robust Covariance Matrix Estimators
  • splines built in
  • stats built in
  • stats4 built in
  • stringi-1.1.6 Character String Processing Facilities
  • survival-2.41-3 Survival Analysis
  • tibble-1.4.2 Simple Data Frames
  • tidyr-0.8.0 Easily Tidy Data with ‘spread()’ and ‘gather()’ Functions
  • tidyselect-0.2.3 Select from a Set of Strings
  • tools built in
  • utf8-1.1.3 Unicode Text Processing
  • utils built in
  • zlibbioc 1.24.0
  • zoo-1.8-1 S3 Infrastructure for Regular and Irregular Time Series (Z’s Ordered Observations)

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