Package List
- BH-1.65.0-1 Boost C++ Header Files
- Biobase 2.38.0
- BiocGenerics 0.24.0
- Biostrings 2.46.0
- DBI-0.7 R Database Interface
- DNAcopy 1.52.0
- GENESIS 2.8.1
- GWASExactHW-1.01 Exact Hardy-Weinburg testing for Genome Wide Association Studies
- GWASTools 1.24.1
- GenomeInfoDb 1.14.0
- GenomeInfoDbData 1.0.0
- GenomicRanges 1.30.1
- IRanges 2.12.0
- MASS-7.3-48 Support Functions and Datasets for Venables and Ripley’s MASS
- Matrix-1.2-12 Sparse and Dense Matrix Classes and Methods
- MatrixModels-0.4-1 Modelling with Sparse And Dense Matrices
- R6-2.2.2 Classes with Reference Semantics
- RCurl-1.95-4.10 General Network (HTTP/FTP/…) Client Interface for R
- RSQLite-2.0 ‘SQLite’ Interface for R
- Rcpp-0.12.15 Seamless R and C++ Integration
- S4Vectors 0.16.0
- SeqArray 1.18.2
- SeqVarTools 1.16.0
- SparseM-1.77 Sparse Linear Algebra
- XVector 0.18.0
- assertthat-0.2.0 Easy Pre and Post Assertions
- base built in
- bindr-0.1 Parametrized Active Bindings
- bindrcpp-0.2 An ‘Rcpp’ Interface to Active Bindings
- bit-1.1-12 A Class for Vectors of 1-Bit Booleans
- bit64-0.9-7 A S3 Class for Vectors of 64bit Integers
- bitops-1.0-6 Bitwise Operations
- blob-1.1.0 A Simple S3 Class for Representing Vectors of Binary Data
(‘BLOBS’)
- cli-1.0.0 Helpers for Developing Command Line Interfaces
- compiler built in
- crayon-1.3.4 Colored Terminal Output
- datasets built in
- digest-0.6.15 Create Compact Hash Digests of R Objects
- dplyr-0.7.4 A Grammar of Data Manipulation
- gdsfmt-1.14.1 R Interface to CoreArray Genomic Data Structure (GDS) files
- glue-1.2.0 Interpreted String Literals
- grDevices built in
- graph-1.56.0 graph: A package to handle graph data structures
- graphics built in
- grid built in
- lattice-0.20-35 Trellis Graphics for R
- lmtest-0.9-35 Testing Linear Regression Models
- logistf-1.22 Firth’s Bias-Reduced Logistic Regression
- magrittr-1.5 A Forward-Pipe Operator for R
- memoise-1.1.0 Memoisation of Functions
- methods built in
- mgcv-1.8-23 Mixed GAM Computation Vehicle with Automatic Smoothness
Estimation
- mice-2.46.0 Multivariate Imputation by Chained Equations
- nlme-3.1-131 Linear and Nonlinear Mixed Effects Models
- nnet-7.3-12 Feed-Forward Neural Networks and Multinomial Log-Linear Models
- pillar-1.1.0 Coloured Formatting for Columns
- pkgconfig-2.0.1 Private Configuration for ‘R’ Packages
- plogr-0.1-1 The ‘plog’ C++ Logging Library
- purrr-0.2.4 Functional Programming Tools
- quantreg-5.34 Quantile Regression
- quantsmooth 1.44.0
- rlang-0.1.6 Functions for Base Types and Core R and ‘Tidyverse’ Features
- rpart-4.1-12 Recursive Partitioning and Regression Trees
- sandwich-2.4-0 Robust Covariance Matrix Estimators
- splines built in
- stats built in
- stats4 built in
- stringi-1.1.6 Character String Processing Facilities
- survival-2.41-3 Survival Analysis
- tibble-1.4.2 Simple Data Frames
- tidyr-0.8.0 Easily Tidy Data with ‘spread()’ and ‘gather()’ Functions
- tidyselect-0.2.3 Select from a Set of Strings
- tools built in
- utf8-1.1.3 Unicode Text Processing
- utils built in
- zlibbioc 1.24.0
- zoo-1.8-1 S3 Infrastructure for Regular and Irregular Time Series (Z’s
Ordered Observations)