fhSeurat-4.1.1-foss-2021b-R-None

Known Issues

• None

Package List

• Biobase-2.56.0 Biobase: Base functions for Bioconductor
• BiocGenerics-0.42.0 S4 generic functions used in Bioconductor
• BiocNeighbors-1.14.0 Nearest Neighbor Detection for Bioconductor Packages
• BiocParallel-1.28.1 Bioconductor facilities for parallel evaluation
• BiocSingular-1.12.0 Singular Value Decomposition for Bioconductor Packages
• Biostrings-2.64.0 Efficient manipulation of biological strings
• DelayedArray-0.22.0 A unified framework for working transparently with on-disk and in-memory array-like datasets
• DelayedMatrixStats-1.18.0 Functions that Apply to Rows and Columns of ‘DelayedMatrix’ Objects
• GenomeInfoDb-1.32.1 Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
• GenomeInfoDbData-1.2.8 Species and taxonomy ID look up tables used by GenomeInfoDb
• GenomicRanges-1.48.0 Representation and manipulation of genomic intervals
• HDF5Array-1.24.2 HDF5 backend for DelayedArray objects
• IRanges-2.30.0 Foundation of integer range manipulation in Bioconductor
• MatrixGenerics-1.8.0 S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects
• RcppAnnoy-0.0.19 ‘Rcpp’ Bindings for ‘Annoy’, a Library for Approximate Nearest Neighbors
• RcppHNSW-0.3.0 ‘Rcpp’ Bindings for ‘hnswlib’, a Library for Approximate Nearest Neighbors
• ResidualMatrix-1.6.1 Creating a DelayedMatrix of Regression Residuals
• Rhdf5lib-1.18.0 hdf5 library as an R package
• Rhtslib-1.28.0 HTSlib high-throughput sequencing library as an R package
• Rsamtools-2.12.0 Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
• S4Vectors-0.34.0 Foundation of vector-like and list-like containers in Bioconductor
• ScaledMatrix-1.4.0 Creating a DelayedMatrix of Scaled and Centered Values
• Seurat-4.1.1 Tools for Single Cell Genomics
• SeuratObject-4.1.1 Data Structures for Single Cell Data
• Signac-1.7.0 Analysis of Single-Cell Chromatin Data
• SingleCellExperiment-1.18.0 S4 Classes for Single Cell Data
• SummarizedExperiment-1.26.0 SummarizedExperiment container
• XVector-0.36.0 Foundation of external vector representation and manipulation in Bioconductor
• batchelor-1.12.3 Single-Cell Batch Correction Methods
• beachmat-2.12.0 Compiling Bioconductor to Handle Each Matrix Type
• dqrng-0.3.0 Fast Pseudo Random Number Generators
• rhdf5-2.40.0 R Interface to HDF5
• rhdf5filters-1.8.0 HDF5 Compression Filters
• rsvd-1.0.5 Randomized Singular Value Decomposition
• scattermore-0.8 Scatterplots with More Points
• scuttle-1.6.3 Single-Cell RNA-Seq Analysis Utilities
• sitmo-2.0.2 Parallel Pseudo Random Number Generator (PPRNG) ‘sitmo’ Header Files
• sparseMatrixStats-1.8.0 Summary Statistics for Rows and Columns of Sparse Matrices
• uwot-0.1.11 The Uniform Manifold Approximation and Projection (UMAP) Method for Dimensionality Reduction
• zlibbioc-1.42.0 An R packaged zlib-1.2.5