LoFreq-2.1.3.1

LoFreq is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It makes full use of base-call qualities and other sources of errors inherent in sequencing (e.g. mapping or base/indel alignment uncertainty), which are usually ignored by other methods or only used for filtering.

Project Homepage: LoFreq

Usage:

module load LoFreq/2.1.3.1-foss-2016b