SpaceRanger-1.3.0

Space Ranger is a set of analysis pipelines that process Visium spatial RNA-seq output and brightfield microscope images in order to detect tissue, align reads, generate feature-spot matrices, perform clustering and gene expression analysis, and place spots in spatial context on the slide image.

Project Homepage: SpaceRanger

Usage:

module load SpaceRanger/1.3.0-GCC-10.2.0