PLINK2-20210826-linux_x86_64

PLINK2 is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. The focus of PLINK2 is purely on analysis of genotype/phenotype data.

Recent version history

• 26 Aug 2021: –pmerge-list concatenation-job detector no longer misses concatenation jobs where adjacent input files have same-position variants but those variants are always sorted by ID. –dummy can now generate phased data.

• 16 Aug: –parameters should now behave as described in the documentation when –glm is run with both the ‘sex’ and ‘interaction’ modifiers.

• 4 Aug: –update-sex now accepts ‘U’/’u’ as unknown-sex codes.

• 1 Jul: Fixed –bcf bug that could result in a spurious out-of-memory error when the file has no INFO entries.

Project Homepage: PLINK2

Usage:

module load PLINK2/20210826-linux_x86_64