Changelog

VISCfunctions 1.3.1

• Report loaded and attached packages in package reproducibility table (#132)
• Report nodename in platform reproducibility table (#121)
• Add B cell example dataset from G001 flow and sequencing file (#108)
• Maintenance of package and CI (#114, #116, #124)
• VISCfunctions now depends on R >= 4.1.0 (#134)
• Auto-generate VISCfunctions pkgdown website with GitHub Actions (#119)

VISCfunctions 1.3.0

• Fix bug in pairwise_test_bin() and pairwise_test_cont() (#111)
• Add option to show library path in packages reproducibility table (#107)
• Maintenance of package and CI (#110, #107)

VISCfunctions 1.2.4

• Suppress warning from get_full_name() when fragile ldapsearch system call fails on Linux and macOS (#96)

VISCfunctions 1.2.3

• Use shorter git hash in reproducibility table (#92)
• Update t-test syntax in unit test expectations to avoid new error message introduced in R >= 4.4 (#89)
• Update instructions for installing vignettes with dependencies (#94)
• Update CI (#91)

VISCfunctions 1.2.2

• Fixed bug in pairwise_test_cont() to properly catch paired comparisons where no paired data points exist.
• Updated get_session_info() test to account for changes in sessioninfo::session_info()
• Removed car dependency

VISCfunctions 1.2.1

• pairwise_test_cor() is now named cor_test_pairs(). The function cor_test_pairs() now returns a data.frame with information on any ties in each variable instead of number of unique values.

VISCfunctions 1.2.0

• New Functions:
  • cor_test() for testing between two continuous variable
  • cor_test_pairs() for group pairwise correlation testing (i.e. correlating values between all combinations antigens)
  • create_step_curve() function for survival curves and other step curves
  • mb_results() for Magnitude Breadth curves and calculating Area under the MB curve
  • trapz_sorted() for Trapezoidal Integration of messy data
  • collapse_group_row() for an alternative to kableExtra::collapse_rows() on long tables
  • binom_ci() to supersede wilson_ci()
• Minor Changes:
  • Update README file and add NEWS, CONTRIBUTING, and CONDUCT files
  • Remove do() examples
  • Add geometric mean/median ability in pairwise_test_cont()
  • Updated Overview vignette with all additions and changes
• Bug fixes:
  • Fixed issue where two_samp_bin_test() could give p>1
  • Fixed issue with reproducibility tables in Mac

VISCfunctions 1.1.4

• Minor change to remove devtools dependency

VISCfunctions 1.1.3

• New Functions:
  • escape() to easily make latex friendly columns with \ in front of special characters
  • wilson_ci() function for Wilson Confident Intervals
  • pariwise_test_bin() for pairwise binary testing comparisons (i.e. pairwise group differences in response rates)
• Minor Changes:
  • Adding suffix param to stat_paste(). Now easy to add % or something else after each stat, if needed
  • Improved documentation and minor fixes to two_samp_cont_test()
  • Added vignette for overview of package

VISCfunctions 1.1.2

• New Functions:
  • get_full_name() and get_session_info() for supplemental tables in reports
• Minor Changes:
  • round_away_0() allows completely NA vectors
  • pretty_pvalues() now has for “latex”, “pandoc”, “html”, and “no_markup” output options
• Bug fixes:
  • two_samp_bin_test(): Barnard Test now run correctly
  • Change in output type in pvalue() from coin package addressed
  • Fix versioning to common three digit method

VISCfunctions 1.0/1.1

Initial Package Development