Calculate CRISPR scores — calc

This calculates the log fold change for a gimap dataset based on the annotation and metadata provided.

calc_crispr(.data = NULL, gimap_dataset)

Arguments

.data: Data can be piped in with tidyverse pipes from function to function. But the data must still be a gimap_dataset
gimap_dataset: A special dataset structure that is setup using the `setup_data()` function.

Examples

if (FALSE) { # \dontrun{

gimap_dataset <- get_example_data("gimap")

# Highly recommended but not required
run_qc(gimap_dataset)

gimap_dataset <- gimap_dataset %>%
  gimap_filter() %>%
  gimap_annotate(cell_line = "HELA") %>%
  gimap_normalize(
    timepoints = "day"
  ) %>%
  calc_crispr()

# To see results
gimap_dataset$crispr_score
} # }