Function reference • gimap

All functions
`calc_crispr()`	Calculate CRISPR scores
`calc_gi()`	Calculate Genetic Interaction scores
`example_data_folder()`	Get file path to an default credentials RDS
`get_example_data()`	Returns example data for package
`gimap_annotate()`	Annotate gimap data
`gimap_filter()`	A function to run filtering
`gimap_normalize()`	Normalize Log fold changes
`gimap_rep_stats()`	Do tests for each replicate --an internal function used by calc_gi() function
`hello()`	Hello, World!
`qc_cdf()`	Create a CDF for the pgRNA normalized counts
`qc_constructs_countzero_bar()`	Create a bar graph that shows the number of replicates with a zero count for pgRNA constructs flagged by the zero count filter
`qc_cor_heatmap()`	Create a correlation heatmap for the pgRNA CPMs
`qc_filter_plasmid()`	Create a filter for pgRNAs which have a low log2 CPM value for the plasmid/Day 0 sample/time point
`qc_filter_zerocounts()`	Create a filter for pgRNAs which have a raw count of 0 for any sample/time point
`qc_plasmid_histogram()`	Create a histogram with plasmid log2 CPM values and ascertain a cutoff for low values
`qc_sample_hist()`	Create a histogram for the pgRNA log2 CPMs, faceted by sample
`qc_variance_hist()`	Create a histogram for the variance within replicates for each pgRNA
`run_qc()`	Run Quality Control Checks
`setup_data()`	Making a new gimap dataset

Reference