Create results table that has CRISPR scores, Wilcoxon rank-sum test and t tests.
calc_gi(.data = NULL, gimap_dataset)
Data can be piped in with tidyverse pipes from function to function. But the data must still be a gimap_dataset
A special dataset structure that is setup using the `setup_data()` function.
{
gimap_dataset <- get_example_data("gimap")
# Highly recommended but not required
run_qc(gimap_dataset)
gimap_dataset <- gimap_dataset %>%
gimap_filter() %>%
gimap_annotate() %>%
gimap_normalize(
timepoints = "day",
replicates = "rep"
) %>%
calc_crispr() %>%
calc_gi()
saveRDS(gimap_dataset, "gimap_dataset_final.RDS")
}
#> Error: there is already an output .Rmd file./gimap_QC_Report.Rmd. Please remove or rename this file, or choose another output_file name.