Plot CRISPR scores after normalization — plot

This plots normalization after CRISPR scores have been calculated

plot_crispr(.data = NULL, gimap_dataset, output_file = "crispr_norm_plot.png")

Arguments

.data: Data can be piped in with tidyverse pipes from function to function. But the data must still be a gimap_dataset
gimap_dataset: A special dataset structure that is setup using the `setup_data()` function.
output_file: A file for the output

Value

A ggplot2 boxplot of the CRISPR scores separated by the type of target. Can be used to determine the normalization has proceeded properly.

Examples

# \donttest{

gimap_dataset <- get_example_data("gimap") %>%
  gimap_filter() %>%
  gimap_annotate(cell_line = "HELA") %>%
  gimap_normalize(
    timepoints = "day",
    missing_ids_file = tempfile()
  )
#> Annotating Data
#> 
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#> Downloading: Achilles_common_essentials.csv
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#> Normalizing Log Fold Change

# Plot:
plot_crispr(gimap_dataset)

# }