Rank plot for target-level GI scores — plot_rank

This plot is meant to be functionally equivalent to Fig 5a (for HeLa, equivalent of Fig 3c for PC9). Rank plot of target-level GI scores. Dashed horizontal lines are for GI scores of 0.25 and -0.5

plot_rank_scatter(gimap_dataset, reps_to_drop = "")

Arguments

gimap_dataset: A special dataset structure that is originally setup using `setup_data()` and has had gi scores calculated with `calc_gi()`.
reps_to_drop: Names of replicates that should be not plotted (Optional)

Examples

if (FALSE) { # \dontrun{

gimap_dataset <- get_example_data("gimap") %>%
  gimap_filter() %>%
  gimap_annotate(cell_line = "HELA") %>%
  gimap_normalize(
    timepoints = "day"
  ) %>%
  calc_gi()

# To plot results
plot_exp_v_obs_scatter(gimap_dataset, reps_to_drop = "Day05_RepA_early")
plot_rank_scatter(gimap_dataset, reps_to_drop = "Day05_RepA_early")
plot_volcano(gimap_dataset, reps_to_drop = "Day05_RepA_early")
} # }